Adobe intentionally kept all the premium reporting services, B2B functionalities, and marketing tools available in its paid version of Magento - Magento Commerce. But that doesn't mean the free Open Source version is neglected. Both versions undergo similar coding standards and are developed at the same time and may be by some of the same team members. If you are a small and medium business- the online sale is not going to be large (large number of products/SKUs, financial turnover) then sticking to the Open Source one will be less expensive.
Bear in mind, the built-in features of Magento Commerce that you are missing out on can be accomplished using 3rd party plugins and tools. Even some of the premium themes now come with a large number of extensions that not only provide those features but add additional features which the paid version doesn't have.
Choosing premium extensions and themes from Magento's premium partners can ensure you can maintain your site in a more tension-free manner.